rs27673582 SNP Detail

Summary

• ID
  rs27673582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9115349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTTGAAT TCCAGGCTTG
  GAGGTTTCAG TTTAGGGCCA TTTGGCATTT GGTCTCCTTT GGAGTCCCTG ACTTCCCAAT
  ATGCAGAAGC ACAGGTGGGT CCTCTCATGG CTGAGAGACC AACAAGAGAG GGAAAGGGGC
  TCGAATCCCC AGTGAGCAGA GGTCCACAGC TCCACTCTTA CAAGTTCTAC CACCTTCCAG
  Y
  AGTGCCACCG GCTGAGGGAC AGGCTCCAGT GACCCTTTCC AGGTTCCAGC ATCTGATAGT
  ATCTAGCTCT AGTAGGACTG AATCAAGTTT CAGAGATGAC CCAGGTAAAG GGAGATAATT
  TGAGTTTGTC CTCTTAATCT ATGTGTCCTC CTAAGGACGG ATCAGAGGAA GGCAGAAAGA
  CTGTGGGAAA GAATACAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
ss37857906	NES08664651	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	C	T	T	T	T		T	C
ss145985364	ENSMUSSNP5162668	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T									C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ
rs27673582					SNP	T	T	T	T	T	T	C	T	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857906	NES08664651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9115349 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	506 bp proximal
Rr588668	regulatory region 588668	1752 bp proximal