rs27673581 SNP Detail

Summary

• ID
  rs27673581
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9115995 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGCCAGCCT GAGCTGCAGA AAGACACCTT AGGTGCGGGT
  GGGGGTGGGA CAGGGGGGTG GGAAGAGGAA CAAAGAACAG CAAACCAGGA AATGAAAGGC
  K
  ACGTGAGAGC TTGATCTTAT GACTTCTCAG AAGGCGGTGA ACATGATAAG GCTTTCCCAC
  CAGAGGAAGG GGCAGTTCAG AAAGAACGTG ATTAGATGGT                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857905	NES08664652	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	G	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673581					SNP	T	T	T	T	T	G	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857905	NES08664652	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9115995 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	within coordinates
Rr588668	regulatory region 588668	1106 bp proximal