rs27673579 SNP Detail

Summary

• ID
  rs27673579
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9118176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATAGATT CCAGGACTTG
  ATGCTGATGC TGCAAGCAAC AGGGTGTGCT GTCTGTGTGT AGTCCTCGTC TGACTGGCCA
  TGACTGCTGC TCATTGTCTT AAAGATGAGG AACTTATAAT TGTCTTTATT TGTTAAAAAT
  CATTGGTTTT AGCCATTGAT CTTTTTTTCC TCTTAAATTT GTCCATTTTC TCTAGGATTC
  Y
  AGACTACCGT GAGTTAATTT TGTTCGTGGA GATCCTTCTG TGAACACTCA GGCTCTGGCA
  CATAAAATGC CCCACTCGCA AGTAAGCAGG ACCTGAACGA GAGGGACAAG GGACAAGGGG
  AAAGGGGAGC TCCTGAAAGT GCTGACAGCA AACAGTGGCA GATGTCCGGT GGAATGCTGG
  CTCACTGGGA CAGAAGCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857903	NES08664566	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673579					SNP	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857903	NES08664566	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9118176 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	1778 bp distal
Rr588668	regulatory region 588668	571 bp distal