rs27673578 SNP Detail

Summary

• ID
  rs27673578
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9118223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCTGTG TGTAGTCCTC
  GTCTGACTGG CCATGACTGC TGCTCATTGT CTTAAAGATG AGGAACTTAT AATTGTCTTT
  ATTTGTTAAA AATCATTGGT TTTAGCCATT GATCTTTTTT TCCTCTTAAA TTTGTCCATT
  TTCTCTAGGA TTCTAGACTA CCGTGAGTTA ATTTTGTTCG TGGAGATCCT TCTGTGAACA
  Y
  TCAGGCTCTG GCACATAAAA TGCCCCACTC GCAAGTAAGC AGGACCTGAA CGAGAGGGAC
  AAGGGACAAG GGGAAAGGGG AGCTCCTGAA AGTGCTGACA GCAAACAGTG GCAGATGTCC
  GGTGGAATGC TGGCTCACTG GGACAGAAGC AGGGTGCCGA ACACTTCAGG GATACTTCAT
  CATAGCTCTC CAGCATGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
ss37857902	NES08664567	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ
rs27673578					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857902	NES08664567	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9118223 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	1825 bp distal
Rr588668	regulatory region 588668	618 bp distal