rs27673576 SNP Detail

Summary

• ID
  rs27673576
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9118572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGGTGCC GAACACTTCA
  GGGATACTTC ATCATAGCTC TCCAGCATGC CTCTCGGCAG CTAAGGCTAC TTCTCCAAAC
  TGATGGCAAC GTGGATGAGG ACGTATACAG AGACGAAGCA AACGTCACAG GGTCATAGGG
  TCAAAGGACA ACCTGGGCTA ATAGAAAGCC AGGGCTCTCT TCTGCAGCCA GTTCCCTCTG
  Y
  TGCCTTCTCC TTCCTGAGCC CTATACAAAG CACTCAGTTT AGTATCAAAG TGACCCTTGT
  GGCTGTCAGG GGTGCTGGGG ACAAAATGGG AGCAGGATAT GGCAGCTAGA TTCAGAGAGT
  CACACACAAG ACTTATGCAG AAAGGGTTCC TCAAAATGAC AGGGAGAAAG GCAATAGCTG
  GGTAGCCCCA CATTTTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37857900	NES08664571	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27673576					SNP	C	C	C	C	T	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37857900	NES08664571	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9118572 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	74 bp downstream
Rr588668	regulatory region 588668	967 bp distal