rs27672286 SNP Detail

Summary

• ID
  rs27672286
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9569063 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGACCAATC AGTCAGGAAA GTGCCATTCT TCCCATAACG
  CCTTTGTAGG AGTGGAGATT AAAGCTGTGG CCATCTTGCA CAAAAGTTGA AGAAAATCCA
  K
  CAAAGGCAAT CCTAGCGTCA TGCACACCAA GTACATAAAG CTACCTTAAA GCCAATGGCC
  ACAGCAAACA TGATAGCCAG CTGCGTCTCT CTGCTGGCC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37855812	NES08652318	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	G	T	G	T
ss145989022	ENSMUSSNP2685993	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	DBA/2J	FVB/NJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27672286					SNP	T	T	G	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855812	NES08652318	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9569063 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
D4Mit263	DNA segment, Chr 4, Massachusetts Institute of Technology 263	783 bp proximal
Gm19130	predicted gene, 19130	900 bp downstream