rs27672276 SNP Detail

Summary

• ID
  rs27672276
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9569615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTCTTT GACAGACTTT
  CTCTCTGACC AGTCCATGAT CCCCTGGTCC TACACGCAGA GTTCATGTTC CTTCTGCTCC
  AGTCTGTTCT CCAGCTGTGA GAACGAGCTC TCATTCTCAC CTGTATGTCC CGCAGCTTTC
  GTTTATTCGG CACAATGCTG GGTTCCAGCA TGCAGGAGTT CTCTATGCGG GTCTGCTGTT
  R
  GAATTCTCAG AAAGTCAAAG GCAATCCTTT AACATCCCTG CAAGGGTGCT ATTCCTCAGA
  GTAATGATAT GGAGTCTGCC TTCTCTCATT TTTTCCAGAA GCATTATTTT AAGTTACAAG
  CTCTAAATGA AGGTTAGAGA CAGATCAACA GGTAATGTAC TTGCTATACA AGGATGAGGG
  CACGAGTTCC CATCCCCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37855802	NES08652328	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27672276					SNP	A	A	A	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37855802	NES08652328	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9569615 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
D4Mit263	DNA segment, Chr 4, Massachusetts Institute of Technology 263	231 bp proximal
Gm19130	predicted gene, 19130	348 bp downstream