rs27671535 SNP Detail

Summary

• ID
  rs27671535
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178398679 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAAGGGCA AGGAGGGAAC
  AGGGATGATG GGTAATTTCC AATTTGACCC ACAGGATGGG TGATGGAAAT GTCCACAGAT
  GTCTGTCTCA TTAAGAACGG TCATGAGGTG AAACTTTTGT TATACAGAGC TGTGATGCCT
  AAGTCTCCCA CAGAAGGCTC CTCTGCCCTC CGTACACAGA CATTCATCTC TGAGGTAAAC
  Y
  GGAGTTCCTC CTACCCACAG TCCTTTGTTC CTCGAAGGGC CACACAGCTT CCTTGTTCCC
  AATTTCACAC GTTTTCCAGC AGTACCTGGA TGCCTGGGAG TTTGGGAACC CCTGTCTCCT
  CAGCCTTAGC CTGTGTCATT TCTCACATAG GCTGGTCCCC ATCTTAGGCT GTGTTCTGCC
  ACTCTGGCAC CCCAGTGGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37845960	NES08688904	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27671535					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845960	NES08688904	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178398679 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	1222 bp downstream
Rr572464	regulatory region 572464	1564 bp proximal
Rr572465	regulatory region 572465	1659 bp proximal