rs27671533 SNP Detail

Summary

• ID
  rs27671533
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178398713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTCCAATT TGACCCACAG
  GATGGGTGAT GGAAATGTCC ACAGATGTCT GTCTCATTAA GAACGGTCAT GAGGTGAAAC
  TTTTGTTATA CAGAGCTGTG ATGCCTAAGT CTCCCACAGA AGGCTCCTCT GCCCTCCGTA
  CACAGACATT CATCTCTGAG GTAAACCGGA GTTCCTCCTA CCCACAGTCC TTTGTTCCTC
  R
  AAGGGCCACA CAGCTTCCTT GTTCCCAATT TCACACGTTT TCCAGCAGTA CCTGGATGCC
  TGGGAGTTTG GGAACCCCTG TCTCCTCAGC CTTAGCCTGT GTCATTTCTC ACATAGGCTG
  GTCCCCATCT TAGGCTGTGT TCTGCCACTC TGGCACCCCA GTGGTGGTCA GATAGAGCGA
  CGTACACACA CCGCAGCTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37845958	NES08688906	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27671533					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845958	NES08688906	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178398713 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	1188 bp downstream
Rr572464	regulatory region 572464	1530 bp proximal
Rr572465	regulatory region 572465	1625 bp proximal