rs27671529 SNP Detail

Summary

• ID
  rs27671529
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178398874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAACCGGAG TTCCTCCTAC
  CCACAGTCCT TTGTTCCTCG AAGGGCCACA CAGCTTCCTT GTTCCCAATT TCACACGTTT
  TCCAGCAGTA CCTGGATGCC TGGGAGTTTG GGAACCCCTG TCTCCTCAGC CTTAGCCTGT
  GTCATTTCTC ACATAGGCTG GTCCCCATCT TAGGCTGTGT TCTGCCACTC TGGCACCCCA
  R
  TGGTGGTCAG ATAGAGCGAC GTACACACAC CGCAGCTTTG AGGTGGAATG TGGACCCAAT
  GGAGCAGGTG GAATGCAGAG CAGGGATGTG GATACAGACC TTAGAGGACC ACAAGGTACA
  GGCAAATCCA GGCCAAGACT GAGGAGACAA GTGTTACCCC CATGAGTGGT GAGTGAGTCC
  TCTGCTCTAT CTCTGACTCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37845954	NES08688910	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G		A	G	G	A		G
ss148370259	ENSMUSSNP1829374	ENSEMBL	ENSEMBL_Sanger	f	SNP		A				G
ss320629008	CHEV_2_178491786	CHEVERUD	SCREENING_POP	f	SNP								A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27671529					SNP	G	A	A	A	A	G	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845954	NES08688910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178398874 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	1027 bp downstream
Rr572464	regulatory region 572464	1369 bp proximal
Rr572465	regulatory region 572465	1464 bp proximal