rs27671528 SNP Detail

Summary

• ID
  rs27671528
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178398906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTCGAA GGGCCACACA
  GCTTCCTTGT TCCCAATTTC ACACGTTTTC CAGCAGTACC TGGATGCCTG GGAGTTTGGG
  AACCCCTGTC TCCTCAGCCT TAGCCTGTGT CATTTCTCAC ATAGGCTGGT CCCCATCTTA
  GGCTGTGTTC TGCCACTCTG GCACCCCAGT GGTGGTCAGA TAGAGCGACG TACACACACC
  R
  CAGCTTTGAG GTGGAATGTG GACCCAATGG AGCAGGTGGA ATGCAGAGCA GGGATGTGGA
  TACAGACCTT AGAGGACCAC AAGGTACAGG CAAATCCAGG CCAAGACTGA GGAGACAAGT
  GTTACCCCCA TGAGTGGTGA GTGAGTCCTC TGCTCTATCT CTGACTCAGG GCAGGGATAT
  GTGCTCTCAG GGGAGACGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37845953	NES08688911	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	A	G	G	G	G		G	G	G		G
ss148370269	ENSMUSSNP5123193	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					G
ss320629010	CHEV_2_178491818	CHEVERUD	SCREENING_POP	f	SNP										A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27671528					SNP	G	A	A	A	A	G	G	G	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845953	NES08688911	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178398906 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	995 bp downstream
Rr572464	regulatory region 572464	1337 bp proximal
Rr572465	regulatory region 572465	1432 bp proximal