rs27671525 SNP Detail

Summary

• ID
  rs27671525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178399008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCTGTGTCA TTTCTCACAT
  AGGCTGGTCC CCATCTTAGG CTGTGTTCTG CCACTCTGGC ACCCCAGTGG TGGTCAGATA
  GAGCGACGTA CACACACCGC AGCTTTGAGG TGGAATGTGG ACCCAATGGA GCAGGTGGAA
  TGCAGAGCAG GGATGTGGAT ACAGACCTTA GAGGACCACA AGGTACAGGC AAATCCAGGC
  Y
  AAGACTGAGG AGACAAGTGT TACCCCCATG AGTGGTGAGT GAGTCCTCTG CTCTATCTCT
  GACTCAGGGC AGGGATATGT GCTCTCAGGG GAGACGGAGA AGACACTCAG GAGGTGATAC
  ATGGAGAACA GGGGTATCCT GATTTTTTTT TAAATGATAC ACTTTAGAGT TATCTGAAAG
  GAGGAAATCA TGTTAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37845950	NES08688914	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	C	C	C	C	C		C	C	C		C
ss148370282	ENSMUSSNP1434561	ENSEMBL	ENSEMBL_Sanger	f	SNP		T							C
ss320629013	CHEV_2_178491920	CHEVERUD	SCREENING_POP	f	SNP												T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27671525					SNP	C	T	T	T	T	T	C	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845950	NES08688914	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178399008 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	893 bp downstream
Rr572464	regulatory region 572464	1235 bp proximal
Rr572465	regulatory region 572465	1330 bp proximal