rs27671519 SNP Detail

Summary

• ID
  rs27671519
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178399486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTCCTG TGTAGGTTGC
  CCTGAATGGT ATAAGGGTGC AGGTTGAAAA AGCCATGAGG AACAAGCCAG TAAGCAGCAC
  CCCTCCATGG CCTCTGCTCC ACTCCCTGCC TCCAGGTTCC TGCCCTGAGT TCCCTCAGCG
  ATGGACTGTA ATAGTGATGA GTAAGTCACA TAGGCCTTTT AGTGATGCTG CTCTGTCACA
  S
  AAATAGACAT CCTGAGACCA TTGGCAACCA TGGCAAGAGA GGAGAAGACG AGTTTGAAAG
  GAGATGGACA TGAAGGGGTC CTGTCAGGAC CTAGAGGATG CTCTCTAGTC AGGAGGGATG
  CAGAGAGACG ACAATGTCCA GACAAGGAGC CCGGGAACAG AAGTGAAGGA AGGGAACAGA
  ATGAAGGAGG TGTGGTGTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37845944	NES08688920	PERLEGEN	MM_PANEL2	f	SNP	G	C	C	C	C	G	G	G	G		G	G	G	G		G
ss148370309	ENSMUSSNP3673162	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G
ss320629016	CHEV_2_178492398	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27671519					SNP	G	C	C	C	C	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845944	NES08688920	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178399486 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	415 bp downstream
Rr572464	regulatory region 572464	757 bp proximal
Rr572465	regulatory region 572465	852 bp proximal