rs27671506 SNP Detail

Summary

• ID
  rs27671506
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178400727 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCATAGTC CTTTAAGGTG
  GTACATAACT TCAAAAAAAG ATCTAGACAA ATGCTTTGCT GAAAGAGACA TGCAGGTGAC
  AGACAAGCCT GCAGAGAACC ACAACATGAC ACAGATGTGG AGCTAAAGAG CTAGTTCAAG
  GCCAACCTGG GCAACTTACT GAGACCTTCT CAAACTAAAA AGCTGAAAGA GAGCCAGGCT
  R
  TAGCTCAGGG TTAGTGAGTG CCTGCATGAC TGGGGGCTCT TGGTTCCATC CCCAGGACTA
  GGGAGAAGGG GAAAGAAACT CGAGATGACA ACAGCTGTGA GGAGACGCTA CCCACCGACT
  AGACTGGCTG AAATCCAAAA TAATGACGAT AGCAGATGTC AGTAAGGACA TGGGCTGACA
  GGATCTGTCA TCTATTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37845931	NES08688742	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A		G	G	G	G		G	G	G	G		G
ss45228775	mCV24947348	ABI	CRAMUS_MOUSE	f	SNP		A				G		G
ss148370357	ENSMUSSNP1723961	ENSEMBL	ENSEMBL_Sanger	f	SNP		A						G
ss320629024	CHEV_2_178493639	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27671506					SNP	G	A	A	A	A	G	G	G	G	G	A	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37845931	NES08688742	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178400727 () rs orientation: forward

Symbol	Name	Function Class
Gm74610	predicted gene, 74610	within coordinates
Rr572464	regulatory region 572464	155 bp distal
Rr572465	regulatory region 572465	368 bp distal