rs27670879 SNP Detail

Summary

• ID
  rs27670879
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178686441 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCATGGTG ATAAGGACAG
  AGCCTCTTTG TGGCTATTTT CATCATTTTT TTTTCTTTTA AGCAGGAGAG AAAAGGAAGA
  AAACTGCCTG TGGCATTTCT GAGAGTTCCA TGACTTACAT AGTGAGCCAA TGCTCTTTTA
  ATTTATAGGG ATGCAAATGT GTGCAGAGTT CTTGGTGCCA CTGCCCCGAG TGCCAGAGAA
  R
  TGTCCCTTTG GCTATGAGGA GAATGCCAGC CTGGGACAGA GCTATTTCCC AATTAACCCT
  CATCCCTAGA CTGAGAAGAT GGACCAGGCA AGTGCTTGCC TGGTAGGCAT GAGGACCTGA
  GTAAAAAATC CCGTGTGGTG GTTCATGCCT GGAACCCCAG AACCCAGGAG ATGGAGTCAG
  GTGGGCCAGC CAGTCTAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37843899	NES08698764	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	A	A	A	G	A	A	A	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27670879					SNP	G	A	A	A	A	A	G	A	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37843899	NES08698764	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178686441 () rs orientation: forward

Symbol	Name	Function Class
Gm35948	predicted gene, 35948	within coordinates
Rr572491	regulatory region 572491	729 bp proximal