rs27670871 SNP Detail

Summary

• ID
  rs27670871
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178687320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGGGGTGGG GCAAATGAAT
  GTCATTTATA CTTTTGGAAT AGGAGGTTGG GGGTTAATGT TCAAAGGGCT GGGCTTTTGA
  TGCTGTCTGT CACCCTTTCC AGTGTAGGGC CATGCCTCCA GCTGGGATCC AGGTTCCAGA
  GCTTGCAGCC AGCTCATCTC CTCATTGAAC CATGCAGGAG GAGGGGTTTG AATCCATTGC
  Y
  ACAGGATTGA CAACCTCATA GTAATTGGGG CAGCCCTTCT CCTTAGCAAC CTAAGGGATG
  CTAATGAGAG CCATGTGGTT GGCAGACTGT CAGGCAGGAT GCAGCCACAG GGTGCTAATG
  GAGAGTATGG ACAGGGTACC ATAGAGCGCT AAGAAGAAAT GGAGACCTCC TCCCTCTCTG
  GACATCTCCC AGTCCAATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37843891	NES08698727	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	T	T	C	T	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27670871					SNP	C	T	T	T	T	C	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37843891	NES08698727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178687320 () rs orientation: forward

Symbol	Name	Function Class
Gm35948	predicted gene, 35948	within coordinates
Rr572491	regulatory region 572491	within coordinates