rs27670859 SNP Detail

Summary

• ID
  rs27670859
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178688556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGGGTTA GCCTGAGACA
  TCATGGGTTA GCCTGAGACA CCATGGGTTA GCCTGAGACA TCATGGGTTA GCCTGAGACA
  TCATGGGTTA GCCTGTGTAC TCTCTGGGGT CTGCCACTGA AGAGAGGTTA ACAGGAAACA
  TGGATGGTTT CCAGAGTAAT TATGAACATG CGTCTAGATC CTAAAAGCTC TGCGTCCCCA
  R
  CTCCTTTCCA GCCACCCATG TCCTCAAATG TTATGCCAGG GTGGCATCGG GAGGGAGGAG
  ACAACACAGA AAACCTAAAA GCATCCCTGG ACTCTGAGGA TGTGGAGGAA CAGAGTCCTC
  TCTGAAAACA TGCCTGGGTT TCTGTTTTCT CCTGGGAACA GCTTCTGTTG GTCTCTTCCG
  GCTTCTGTGA CTTCAGGAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37843879	NES08698703	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		A	G	G	G	A	A	A	G
ss45266728	mCV25354806	ABI	CRAMUS_MOUSE	f	SNP	A	G	G					G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27670859					SNP	A	G	G	G	G	G	G	G	A	G	G	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37843879	NES08698703	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178688556 () rs orientation: forward

Symbol	Name	Function Class
Gm35948	predicted gene, 35948	within coordinates
Rr572491	regulatory region 572491	1039 bp distal