rs27669445 SNP Detail

Summary

• ID
  rs27669445
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178272691 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTATTGG GAGTGGACAG
  CACCACGTGG TCCTCTCAGA ATGAAAGATG CGGAGATACA GTGACCTTGA ATCCCAGTCA
  AGATCGTGAA TAATTGAGAA CAGAACTCAG CTGCAGAACA CACTCTGAGC TACTCAGTTT
  TCAGTGCTCT GAACACGTGA TCATGACCTT TCCCGTCTAC CTGGCTCCGG TTCCCAGCTC
  Y
  AGGCCCTCGA GGCTGCTGTT GTGCGCTGTG GTAGAGCAAT GCTTGTCCAC ATTAGTGAAA
  GTTGAGTTTT CCTGTGTGAG TCTCGGTTCC ATCGGAATGG GGCTGCTAAG CAGCGTTCAC
  ACAGACAAGC AGAGTGAGCT CTGAGAACCG TAAAAACACA TAGATGGCTT CATGCGTCCC
  CAAAGGAAAC TACAGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846969	NES08692599	PERLEGEN	MM_PANEL2	f	SNP	T			T		C	C	C		C	C	C		C
ss45324291	mCV25130051	ABI	CRAMUS_MOUSE	f	SNP		T	T		C		C
ss148366632	ENSMUSSNP2580771	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
ss320628566	CHEV_2_178365603	CHEVERUD	SCREENING_POP	f	SNP									T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669445					SNP	T	T	T	T	C	C	C	C	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846969	NES08692599	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178272691 () rs orientation: forward

Symbol	Name	Function Class
Rr572438	regulatory region 572438	756 bp distal
Rr572439	regulatory region 572439	939 bp distal
Rr572440	regulatory region 572440	within coordinates
Rr572441	regulatory region 572441	1984 bp proximal