rs27669438 SNP Detail

Summary

• ID
  rs27669438
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178273038 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCGTAAAAA CACATAGATG
  GCTTCATGCG TCCCCAAAGG AAACTACAGA AAGTTAGATG GACTTTGGAG GGTGCAGGGC
  TGTGTTGGCA GAGCTGATGT GGCTAACAGG TGCTGAGCAG GGCAGCCATG TGAGATGGGA
  GGCCTGAAGC AGGCTCCTCC AGCACCAACG GAGTTAACAA AGGCTGGGTC TCCTGTACGT
  Y
  CATCCGTCCA TCCGTCCATC CGGCAGAGCT GACATGGGGA TCCAGGGTTG CTTTAAATGC
  TTGCCCTGCT GGAGAACCCT GGGCAGAAGT CATGGAAGGA GTCCTGGGTA CTGTTCCAGA
  AAGTCAGAGG CCAAGAGCAA AATGGAGATC TGAGCCAGGA GGTCATGACC AAGGACCACA
  GTGCCCATCC AGGTTTAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846962	NES08692606	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669438					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846962	NES08692606	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178273038 () rs orientation: forward

Symbol	Name	Function Class
Rr572438	regulatory region 572438	1103 bp distal
Rr572439	regulatory region 572439	1286 bp distal
Rr572440	regulatory region 572440	within coordinates
Rr572441	regulatory region 572441	1637 bp proximal