rs27669425 SNP Detail

Summary

• ID
  rs27669425
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178273840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGTAAAG GCCTGTGGAT
  TTGTATCTGT CTCTGGCTAC CTGCAGTGAG TGGCACAAGC TGTGCCATCT GGGAGTCCGA
  GTTTTGGAAA TAACTTTCAC TTTGTAAAGT GTTGCCCCCA TTTGGACTGT CTTCCAAAAT
  TCTGTCCTGC AGGATTCAGG TCCTAGCAGC TTGAGCTGAC TCGGCTACAC AGCGTGCACA
  W
  TTCTGCTCAC TCTTCAAGTC ATTGTCATGT CCTGCGTCCC CTCTGTCTCC CCCATGGTTT
  ACAGGGATCC TTGAGAGTAG AAACGCCTTT AGAAGCTGCG TGTTCTCAGG GCCTGGCACA
  TCGCCAATCC AAGTGGATGC TCGTTTCGCT CCTGTCCTTC CTCCCTATCT CCCTTTAAAA
  TCAGCGCCGG ACTGCACAAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846949	NES08692623	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		T	T	T	A		T	T	A	T		T
ss45255578	mCV25130039	ABI	CRAMUS_MOUSE	f	SNP		A						T		T
ss148366651	ENSMUSSNP7173649	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								T
ss320628570	CHEV_2_178366752	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669425					SNP	A	A	A	A	A	A	A	T	T	T	T	A	A	T	T	A	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846949	NES08692623	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178273840 () rs orientation: forward

Symbol	Name	Function Class
Rr572438	regulatory region 572438	1905 bp distal
Rr572440	regulatory region 572440	420 bp distal
Rr572441	regulatory region 572441	835 bp proximal