rs27669422 SNP Detail

Summary

• ID
  rs27669422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178273980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTCCTGC AGGATTCAGG
  TCCTAGCAGC TTGAGCTGAC TCGGCTACAC AGCGTGCACA TTTCTGCTCA CTCTTCAAGT
  CATTGTCATG TCCTGCGTCC CCTCTGTCTC CCCCATGGTT TACAGGGATC CTTGAGAGTA
  GAAACGCCTT TAGAAGCTGC GTGTTCTCAG GGCCTGGCAC ATCGCCAATC CAAGTGGATG
  Y
  TCGTTTCGCT CCTGTCCTTC CTCCCTATCT CCCTTTAAAA TCAGCGCCGG ACTGCACAAT
  CCAATGCAAC GCTCCTTTAA CTGTACAAAT GGATGCTTTC ATCTGGCTCA ATTTTCATAA
  AAGAGTACAG GGAAAGAAAT TAAAATACAA AAATTCGGGC TGGAGAGACA TCTCAGTGGT
  CGAGCCTGCT CTCCTGCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846946	NES08692629	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669422					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846946	NES08692629	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178273980 () rs orientation: forward

Symbol	Name	Function Class
Rr572440	regulatory region 572440	560 bp distal
Rr572441	regulatory region 572441	695 bp proximal
Rr572442	regulatory region 572442	1977 bp proximal