rs27669415 SNP Detail

Summary

• ID
  rs27669415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178274677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGGGTTCCA GTGTTAAGGG
  ATACTGAAGC TTTGTGGTGC TGGGGAGCAG GGAGGCATGA CTTGGTTTGA GAGCTGGGTA
  AAGCCACAGT GGGGCAGAGA CACTTACTTG GATGTAGGCA TTCAAGCAGC AGTTGGTTCA
  GGGGCAGTGC GGAGATGGCA GCCATCTTAG CTGGCATTTC CCTGAGTCTG CTGTTTCACC
  Y
  CAGGTGCTTG CTGTGGATCA GTCAGCTGAT CCTGACCTGA CTTCTCTGTC AGGCCTGTGT
  CATTGTTACC GCTTTGCAGA CGCCTGCTGG AGGCCAGCGT ACAAATGGAG CTGCTCCACA
  CCGGAAGTGA GCGGGCTCAA AGGGATGCCC CATGTGGAGT GACTTTGGCA AGTGACCTTG
  GCAAGTTCCC AGTGGTCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846939	NES08692547	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669415					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846939	NES08692547	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178274677 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	1874 bp upstream
Rr572440	regulatory region 572440	1257 bp distal
Rr572441	regulatory region 572441	within coordinates
Rr572442	regulatory region 572442	1280 bp proximal