rs27669409 SNP Detail

Summary

• ID
  rs27669409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275330 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTAGCAACA AGGGCCATAT
  GCTTTTCATC TGTCCTGGAG CCTGCAATGG GGCTCTGCCA ACTACCAAAT GCAGTTCCAC
  AAGCAATCAC ATGCAAGTTT AACTCTGTCC TGGCAGCCTG GGCTTGGACG CTCACCCTAG
  CCACCCCGGC TTCTCCTGGA GTTGAATCAA CTTGACATGC ATCCATTGGT GTCTACTGTG
  Y
  GCTGGACTCC AGGGCAGGCA GAAAGCTGAG GGTCGTGTCG CCTCTGGCCC TGGAAGGGAA
  GGTGAGCCAT GCTTTCGGGC TTTGTCCTAA GCTGTAGACA TGCTCTGGGT CCAGACCTGC
  CCCCTGTGAT GCCTTGACTC TGCCTCCTGC CTGGCAACAG TATGGTTGCC CACCCCCAGA
  GGCTGCCAGG AAGGAGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846933	NES08692553	PERLEGEN	MM_PANEL2	f	SNP	C			C	C	T	T	T	T		T	T	C		T
ss148366675	ENSMUSSNP6945495	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C					T
ss320628575	CHEV_2_178368242	CHEVERUD	SCREENING_POP	f	SNP										C				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669409					SNP	C	C	C	C	C	T	T	T	T	C	T	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846933	NES08692553	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275330 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	1221 bp upstream
Rr572440	regulatory region 572440	1910 bp distal
Rr572441	regulatory region 572441	70 bp distal
Rr572442	regulatory region 572442	627 bp proximal