rs27669406 SNP Detail

Summary

• ID
  rs27669406
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTCAC ATGACAGAAA GCATGCTGGT
  R
  GCTGACAATT GCTGGTTCTC ACCTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846930	NES08692558	PERLEGEN	MM_PANEL2	f	SNP		G	G	G	A	A	G		A	A	G	G		A
ss148366701	ENSMUSSNP6612392	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G				A
ss320628580	CHEV_2_178368475	CHEVERUD	SCREENING_POP	f	SNP								G					G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669406					SNP	G	G	G	G	A	A	G	G	A	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846930	NES08692558	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275563 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	988 bp upstream
Rr572441	regulatory region 572441	303 bp distal
Rr572442	regulatory region 572442	394 bp proximal
Rr572443	regulatory region 572443	1961 bp proximal