rs27669405 SNP Detail

Summary

• ID
  rs27669405
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGAAA GCATGCTGGT AGCTGACAAT
  K
  GCTGGTTCTC ACCTCCCTCA CCCCT                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37846929	NES08692559	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	T	T	G	G		T	T	G	T		T
ss148366706	ENSMUSSNP2059385	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				T
ss320628581	CHEV_2_178368485	CHEVERUD	SCREENING_POP	f	SNP										G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27669405					SNP	G	G	G	G	G	T	T	G	G	G	T	T	G	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846929	NES08692559	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275573 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	978 bp upstream
Rr572441	regulatory region 572441	313 bp distal
Rr572442	regulatory region 572442	384 bp proximal
Rr572443	regulatory region 572443	1951 bp proximal