rs27669400 SNP Detail

Summary

• ID
  rs27669400
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCCACCC CCAGAGGCTG
  CCAGGAAGGA GGAACTGAAG AGGTCACATG ACAGAAAGCA TGCTGGTAGC TGACAATTGC
  TGGTTCTCAC CTCCCTCACC CCTATCCCAG ACACCAGCTC CTCTGTGTTG CTTAGCTCAG
  TGATGACACA GGCCACTCTC ACAGGTGTTC ACCAGTGATG AGCATGGGAT TCTTGCTCTG
  S
  GCTTCCATGC AAACCATGAT GTTGAACCTC ATTGGTTCTC CACCCACTAG GTGCTGCCGC
  TGTCCCTGTG TGTATGTATT TTAAATGTGT CCTCACTATC ACCAAATATC ACCAGGGAGA
  GAGCAAACTC ACCCTGCCTG GTGATTTTGA GAGGACGGTC CAGGGATCTG GGACTCACAG
  GTTTTCTTCT GCGATCCTAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846924	NES08692567	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669400					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846924	NES08692567	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275696 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	855 bp upstream
Rr572441	regulatory region 572441	436 bp distal
Rr572442	regulatory region 572442	261 bp proximal
Rr572443	regulatory region 572443	1828 bp proximal
Tssr28070	transcription start site region 28070	1922 bp downstream