rs27669399 SNP Detail

Summary

• ID
  rs27669399
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178275710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCCAG GAAGGAGGAA
  CTGAAGAGGT CACATGACAG AAAGCATGCT GGTAGCTGAC AATTGCTGGT TCTCACCTCC
  CTCACCCCTA TCCCAGACAC CAGCTCCTCT GTGTTGCTTA GCTCAGTGAT GACACAGGCC
  ACTCTCACAG GTGTTCACCA GTGATGAGCA TGGGATTCTT GCTCTGGGCT TCCATGCAAA
  M
  CATGATGTTG AACCTCATTG GTTCTCCACC CACTAGGTGC TGCCGCTGTC CCTGTGTGTA
  TGTATTTTAA ATGTGTCCTC ACTATCACCA AATATCACCA GGGAGAGAGC AAACTCACCC
  TGCCTGGTGA TTTTGAGAGG ACGGTCCAGG GATCTGGGAC TCACAGGTTT TCTTCTGCGA
  TCCTACACAT GCAGTGACCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846923	NES08692569	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669399					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846923	NES08692569	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178275710 () rs orientation: forward

Symbol	Name	Function Class
Gm40031	predicted gene, 40031	841 bp upstream
Rr572441	regulatory region 572441	450 bp distal
Rr572442	regulatory region 572442	247 bp proximal
Rr572443	regulatory region 572443	1814 bp proximal
Tssr28070	transcription start site region 28070	1908 bp downstream