rs27669205 SNP Detail

Summary

• ID
  rs27669205
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178305415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTACCTCAC AGGGTTTGCT
  TGCTCATCAA TCATGACTAG CTCCAAGGCC ACTGTGCAGG ACATGAGGTG TCAAGAATTG
  TGGGATTATA AAAAAGGACA GAGAACAAAG AAAGAGGGGG AATTCCTTTG ATTTTTAAAA
  AAGAGATAAA CTGGGTCAAA AAAAGAAATA TAGCTTAAAT CTGTATTGTA AGCTAATTCC
  R
  TTTTGAAGTC TTTTGGGAGA CCTTGCATGT TCATTGCTAT AAAGCCTTGG CACGCTGAGG
  ATATCCCTCC ATACACTGAC ATTTCATTCT AAGTTAATGC GCAAGGCCAT GCCTTGCTTT
  TCTGGAAAGG AAAGGGCTGA GGATGGGAGG AAGCCCAAAA CACATTGCTT TAAAACTCTA
  CTTCCGAACG CATCCACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846728	NES08691894	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	G	G	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669205					SNP	A	A	A	A	A	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846728	NES08691894	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178305415 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Rr397573	regulatory region 397573	1361 bp upstream
Rr572447	regulatory region 572447	836 bp distal
Rr572448	regulatory region 572448	1261 bp proximal
Rr572449	regulatory region 572449	1555 bp proximal