rs27669204 SNP Detail

Summary

• ID
  rs27669204
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178305469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGACAT GAGGTGTCAA
  GAATTGTGGG ATTATAAAAA AGGACAGAGA ACAAAGAAAG AGGGGGAATT CCTTTGATTT
  TTAAAAAAGA GATAAACTGG GTCAAAAAAA GAAATATAGC TTAAATCTGT ATTGTAAGCT
  AATTCCATTT TGAAGTCTTT TGGGAGACCT TGCATGTTCA TTGCTATAAA GCCTTGGCAC
  R
  CTGAGGATAT CCCTCCATAC ACTGACATTT CATTCTAAGT TAATGCGCAA GGCCATGCCT
  TGCTTTTCTG GAAAGGAAAG GGCTGAGGAT GGGAGGAAGC CCAAAACACA TTGCTTTAAA
  ACTCTACTTC CGAACGCATC CACTGTGTGA CATTTAAGTC AGCAACAATT AGCCACAGCA
  GTCACAGGCA TGCAGAAAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846727	NES08691895	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G	G	G	G	G	G		G	G	A	G
ss148367452	ENSMUSSNP5782902	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G										A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669204					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846727	NES08691895	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178305469 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Rr397573	regulatory region 397573	1307 bp upstream
Rr572447	regulatory region 572447	890 bp distal
Rr572448	regulatory region 572448	1207 bp proximal
Rr572449	regulatory region 572449	1501 bp proximal