rs27669198 SNP Detail

Summary

• ID
  rs27669198
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178306022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACCTAG AGTCTTGGAG GTCTGATTCT ATCTAGAGGC
  CACAACCCTG GGCCTTAGTA TCTTCACTTG TGTGCTGTGC GATGGTGACT CTCCTTCTTC
  Y
  TCCCAACAGA CTCAGGAAAA TGTGTTCTCC TCCTTGCTAT CATGGAATAG AGATTACCTT
  GTTTCTGTAG CCATGGCAAC CAATTAAACA GAGCAGTGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37846721	NES08691903	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	T	C	C	T	T	C	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27669198					SNP	C	C	C	C	C	T	T	C	C	T	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37846721	NES08691903	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178306022 () rs orientation: forward

Symbol	Name	Function Class
Gm35695	predicted gene, 35695	within coordinates
Gm74926	predicted gene, 74926	1877 bp downstream
Rr397573	regulatory region 397573	754 bp upstream
Rr572447	regulatory region 572447	1443 bp distal
Rr572448	regulatory region 572448	654 bp proximal
Rr572449	regulatory region 572449	948 bp proximal