rs27668961 SNP Detail

Summary

• ID
  rs27668961
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178835237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACGGTGTG CATTAGCTCC
  AAGGCTTGGC AGTCAGGGCA GCCCAACCTG CAGCCTCCTA CATGGGACTG CACAGAGTTC
  CATGAGACAG GCTAGGAAAC CACAGTGGGG TGTCTAGATG CGTTCGGTGG ATCAAAGTGG
  CATTTCCCTT TAGAGCATTA CCCAAGAAGT ATGGTAGAGG CTGTTGCTGT GATATGATGG
  R
  CTGAGTGGTT AAAAGGGCTT ATGGCTTCCT TCTGGCTGTT CTAGGTCACC TGTTAGGGGC
  TCTTCAAGGC ATGCATGGTG CTGATTCTCA TGGGCATCCC TAATGGTTCT TCCTACAAGC
  CAGTGGGCCA TAAGCACTGG AGGTCTCTTT TGTAGAGCTG GGAGATAAGT CCACGCCTCC
  CTCTTTGGAG GCCGCGTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37842783	NES08694979	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27668961					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37842783	NES08694979	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178835237 () rs orientation: forward

Symbol	Name	Function Class
Rr374365	regulatory region 374365	within coordinates
Rr572498	regulatory region 572498	293 bp distal
Rr572499	regulatory region 572499	199 bp proximal
Rr572500	regulatory region 572500	542 bp proximal