rs27668960 SNP Detail

Summary

• ID
  rs27668960
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178835249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGCTCCAA GGCTTGGCAG
  TCAGGGCAGC CCAACCTGCA GCCTCCTACA TGGGACTGCA CAGAGTTCCA TGAGACAGGC
  TAGGAAACCA CAGTGGGGTG TCTAGATGCG TTCGGTGGAT CAAAGTGGCA TTTCCCTTTA
  GAGCATTACC CAAGAAGTAT GGTAGAGGCT GTTGCTGTGA TATGATGGGC TGAGTGGTTA
  W
  AAGGGCTTAT GGCTTCCTTC TGGCTGTTCT AGGTCACCTG TTAGGGGCTC TTCAAGGCAT
  GCATGGTGCT GATTCTCATG GGCATCCCTA ATGGTTCTTC CTACAAGCCA GTGGGCCATA
  AGCACTGGAG GTCTCTTTTG TAGAGCTGGG AGATAAGTCC ACGCCTCCCT CTTTGGAGGC
  CGCGTTCTCC ATTAAGCACT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37842782	NES08694980	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27668960					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37842782	NES08694980	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178835249 () rs orientation: forward

Symbol	Name	Function Class
Rr374365	regulatory region 374365	within coordinates
Rr572498	regulatory region 572498	305 bp distal
Rr572499	regulatory region 572499	187 bp proximal
Rr572500	regulatory region 572500	530 bp proximal