rs27668953 SNP Detail

Summary

• ID
  rs27668953
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178835454 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTATGGCT TCCTTCTGGC
  TGTTCTAGGT CACCTGTTAG GGGCTCTTCA AGGCATGCAT GGTGCTGATT CTCATGGGCA
  TCCCTAATGG TTCTTCCTAC AAGCCAGTGG GCCATAAGCA CTGGAGGTCT CTTTTGTAGA
  GCTGGGAGAT AAGTCCACGC CTCCCTCTTT GGAGGCCGCG TTCTCCATTA AGCACTCCCC
  Y
  TGTCTAAGTA TACACAGTCT ACAGCTTTGC AGGAGGTGGA CCTCCCACTG CAGACAGAGG
  CGTCCTATAA GGCTGGGTCA GTGGAGCGTT ATCACCATGA CAGGCTGAGC TGAGAGTTTC
  TGGTAGATTA TGTTTATTTC TTGGCCATTC TGTGACCACC GTTCATTTAG GGTCAGAAAG
  TTCTTGCACA GCTGCCCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37842775	NES08694987	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27668953					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37842775	NES08694987	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178835454 () rs orientation: forward

Symbol	Name	Function Class
Rr374365	regulatory region 374365	within coordinates
Rr572498	regulatory region 572498	510 bp distal
Rr572499	regulatory region 572499	within coordinates
Rr572500	regulatory region 572500	325 bp proximal