rs27668952 SNP Detail

Summary

• ID
  rs27668952
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178835481 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCACCTGT TAGGGGCTCT
  TCAAGGCATG CATGGTGCTG ATTCTCATGG GCATCCCTAA TGGTTCTTCC TACAAGCCAG
  TGGGCCATAA GCACTGGAGG TCTCTTTTGT AGAGCTGGGA GATAAGTCCA CGCCTCCCTC
  TTTGGAGGCC GCGTTCTCCA TTAAGCACTC CCCCTGTCTA AGTATACACA GTCTACAGCT
  Y
  TGCAGGAGGT GGACCTCCCA CTGCAGACAG AGGCGTCCTA TAAGGCTGGG TCAGTGGAGC
  GTTATCACCA TGACAGGCTG AGCTGAGAGT TTCTGGTAGA TTATGTTTAT TTCTTGGCCA
  TTCTGTGACC ACCGTTCATT TAGGGTCAGA AAGTTCTTGC ACAGCTGCCC CCATGCTGTC
  CCGGGTGCTG ACCCACCCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss37842774	NES08694988	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs27668952					SNP	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37842774	NES08694988	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178835481 () rs orientation: forward

Symbol	Name	Function Class
Rr374365	regulatory region 374365	within coordinates
Rr572498	regulatory region 572498	537 bp distal
Rr572499	regulatory region 572499	within coordinates
Rr572500	regulatory region 572500	298 bp proximal