rs27668946 SNP Detail

Summary

• ID
  rs27668946
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:178836442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCCTCCTG CTCAGAGTGA
  AGGGAAGTTA CAGTCTAGAT GAGCCTTTTC AAAGAAGCCC AACCAAAATG ACAGCCAATA
  TTCTGGTGCT AAAGGTGGTC CGTGCAGGGA GCACCTGGAT GACATAGGCT ATCAATGGGT
  AGTGAGAAAA GACCATGATA GAGTTGGATC CCAGTGGGCA GGAAGCGGGT GGATGGAGGA
  K
  GATTGAACAG AATTTGGAAG ACATGAAATG ATCAGCCAGG GACACGAGTG TGCACAGAGA
  GAGGATCCAA AGAGGATAAG TCAGTGATCA CGGACATGTG CATATGTATA TGTGAATGTG
  AATATACATA TGAACATGTA TGTATAAGTG AATGTTTATA TATGTAGTAA TGTATATATA
  CATATAAATG TGAGTATTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37842768	NES08694951	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27668946					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37842768	NES08694951	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:178836442 () rs orientation: forward

Symbol	Name	Function Class
Rr374365	regulatory region 374365	747 bp downstream
Rr572498	regulatory region 572498	1498 bp distal
Rr572499	regulatory region 572499	421 bp distal
Rr572500	regulatory region 572500	642 bp distal