rs27665584 SNP Detail

Summary

• ID
  rs27665584
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085000 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAGC TCTCAGTAGG GATCCTGAAG
  Y
  CCAGCATGTG GACTGAGAGG GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835705	NES08683032	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	C	T	C		C	T		T
ss45240600	mCV22939319	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C
ss148391733	ENSMUSSNP1786149	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss320632128	CHEV_2_180177912	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27665584					SNP	T	T	C	C	T	C	C	C	T	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835705	NES08683032	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085000 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	506 bp upstream
Rr572756	regulatory region 572756	1964 bp distal
Rr572757	regulatory region 572757	1911 bp proximal
Tssr22237	transcription start site region 22237	930 bp downstream
Tssr22238	transcription start site region 22238	143 bp downstream
Tssr22239	transcription start site region 22239	834 bp upstream
Tssr28110	transcription start site region 28110	608 bp downstream
Tssr28111	transcription start site region 28111	679 bp downstream