rs27665583 SNP Detail

Summary

• ID
  rs27665583
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085327 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATAAAGCAA GGATGAGACC
  CTCAGCTTCT GGTCCTCAGC CATCCTCCCA CTCAGCTCTG CCACGCACCA GCCCCCACCA
  GTTCTTACTG CTCTCAGTTC CCAGCTGGCC CTCCCCAGTC CTAGAGCTGG CATGGGGCAG
  GAAGCTACTC AAACCTCCTC CCTTCCTGAG AGTCACCTGG AAATAAGGTT GAATCCAACT
  K
  CTGATCCACT CCCACTTCTC ATGCCCAGGA GGTATCTGAG AGGATCTATG ATGCTCTTGG
  CTTCACCTAT AGCTTGTGAT CCAAAAGTGA GTCCTGGGCA CAACCTTGGA TTCACTACTG
  CCTTTTCACT CCTTGTGACC TGTCACCATC ATCATTGCAA TCATTGCCAC CATTATTATC
  AACAGCATCA CCATCCTCAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835704	NES08683034	PERLEGEN	MM_PANEL2	f	SNP	G		T	G	T	T		G	G	G		G
ss45321957	mCV22939310	ABI	CRAMUS_MOUSE	f	SNP	G	G	T		T
ss148391745	ENSMUSSNP4350334	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T		T
ss320632131	CHEV_2_180178239	CHEVERUD	SCREENING_POP	f	SNP							T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs27665583					SNP	G	G	T	G	T	T	T	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835704	NES08683034	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085327 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	179 bp upstream
Rr572757	regulatory region 572757	1584 bp proximal
Tssr22237	transcription start site region 22237	1257 bp downstream
Tssr22238	transcription start site region 22238	470 bp downstream
Tssr22239	transcription start site region 22239	507 bp upstream
Tssr28110	transcription start site region 28110	281 bp downstream
Tssr28111	transcription start site region 28111	352 bp downstream