rs27665582 SNP Detail

Summary

• ID
  rs27665582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085395 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCCCCAC CAGTTCTTAC
  TGCTCTCAGT TCCCAGCTGG CCCTCCCCAG TCCTAGAGCT GGCATGGGGC AGGAAGCTAC
  TCAAACCTCC TCCCTTCCTG AGAGTCACCT GGAAATAAGG TTGAATCCAA CTTCTGATCC
  ACTCCCACTT CTCATGCCCA GGAGGTATCT GAGAGGATCT ATGATGCTCT TGGCTTCACC
  Y
  ATAGCTTGTG ATCCAAAAGT GAGTCCTGGG CACAACCTTG GATTCACTAC TGCCTTTTCA
  CTCCTTGTGA CCTGTCACCA TCATCATTGC AATCATTGCC ACCATTATTA TCAACAGCAT
  CACCATCCTC ACTATCACCA TCATCAGCAC ACTTTGCCTG AAAAGAAAGA GCAGATCTCA
  GTTCAGTAGG AACAGACTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835703	NES08683036	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T	T		C	C	C	C		C
ss45207319	mCV22939303	ABI	CRAMUS_MOUSE	f	SNP	C	C	T				T
ss148391748	ENSMUSSNP6693011	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T				T
ss320632132	CHEV_2_180178307	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27665582					SNP	C	C	T	T	C	C	T	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835703	NES08683036	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085395 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	111 bp upstream
Rr572757	regulatory region 572757	1516 bp proximal
Tssr22237	transcription start site region 22237	1325 bp downstream
Tssr22238	transcription start site region 22238	538 bp downstream
Tssr22239	transcription start site region 22239	439 bp upstream
Tssr28110	transcription start site region 28110	213 bp downstream
Tssr28111	transcription start site region 28111	284 bp downstream