rs27665580 SNP Detail

Summary

• ID
  rs27665580
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180085974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGACCAGC TGTGAGTCAC
  TGGTCACCAA CAGCTAAGTT AACCGGCTGG GGCAGCAGCT CCCCCTCTCC TCAGCCAAGC
  ATGAAACCTG CTGTCCAGAA CCCCACCCGT CATAATAGCC CAATGTCAAT TCAGCCAGTC
  AAGGCCAAAC GCCAAGCACA GGTGAGCGCT ATTTACTGTA TCTAAGCCCA GGGGCCCACC
  S
  GGGTGCTGCA GGCCTCACTT CTGGTGGCTC CTGCCCCTGC TTTGCAGCAG CTTGTTATAC
  CAGTGCACAC CTTGGTTATC CAACGTGCTC AAGGAGCCAG CATCTGTCCT TCGGTCCTGC
  TGTATTTTGC AATGTAGTCT TATTATCACC TTGAGTTGGT CCGTGTCTAG ACTTTCAACT
  GCCTGAGCTC TGTGGGAGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37835701	NES08682964	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665580					SNP	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835701	NES08682964	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180085974 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	168 bp downstream
Rr572757	regulatory region 572757	937 bp proximal
Tssr22237	transcription start site region 22237	1904 bp downstream
Tssr22238	transcription start site region 22238	1117 bp downstream
Tssr22239	transcription start site region 22239	128 bp downstream
Tssr28110	transcription start site region 28110	347 bp upstream
Tssr28111	transcription start site region 28111	248 bp upstream