rs27665579 SNP Detail

Summary

• ID
  rs27665579
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180086004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTAAGTT AACCGGCTGG
  GGCAGCAGCT CCCCCTCTCC TCAGCCAAGC ATGAAACCTG CTGTCCAGAA CCCCACCCGT
  CATAATAGCC CAATGTCAAT TCAGCCAGTC AAGGCCAAAC GCCAAGCACA GGTGAGCGCT
  ATTTACTGTA TCTAAGCCCA GGGGCCCACC GGGGTGCTGC AGGCCTCACT TCTGGTGGCT
  M
  CTGCCCCTGC TTTGCAGCAG CTTGTTATAC CAGTGCACAC CTTGGTTATC CAACGTGCTC
  AAGGAGCCAG CATCTGTCCT TCGGTCCTGC TGTATTTTGC AATGTAGTCT TATTATCACC
  TTGAGTTGGT CCGTGTCTAG ACTTTCAACT GCCTGAGCTC TGTGGGAGAC TGGCATTCCA
  AGAACCTAGG ATTAGCCCAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835700	NES08682965	PERLEGEN	MM_PANEL2	f	SNP	A			A			C		C	C		A
ss45283285	mCV22939302	ABI	CRAMUS_MOUSE	f	SNP		A	C		C	C
ss148391756	ENSMUSSNP5882285	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	C			C
ss320632136	CHEV_2_180178916	CHEVERUD	SCREENING_POP	f	SNP								C			A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs27665579					SNP	A	A	C	A	C	C	C	C	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835700	NES08682965	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180086004 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	198 bp downstream
Rr572757	regulatory region 572757	907 bp proximal
Tssr22237	transcription start site region 22237	1934 bp downstream
Tssr22238	transcription start site region 22238	1147 bp downstream
Tssr22239	transcription start site region 22239	158 bp downstream
Tssr28110	transcription start site region 28110	377 bp upstream
Tssr28111	transcription start site region 28111	278 bp upstream