rs27665578 SNP Detail

Summary

• ID
  rs27665578
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180086033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCCTCTC CTCAGCCAAG
  CATGAAACCT GCTGTCCAGA ACCCCACCCG TCATAATAGC CCAATGTCAA TTCAGCCAGT
  CAAGGCCAAA CGCCAAGCAC AGGTGAGCGC TATTTACTGT ATCTAAGCCC AGGGGCCCAC
  CGGGGTGCTG CAGGCCTCAC TTCTGGTGGC TCCTGCCCCT GCTTTGCAGC AGCTTGTTAT
  M
  CCAGTGCACA CCTTGGTTAT CCAACGTGCT CAAGGAGCCA GCATCTGTCC TTCGGTCCTG
  CTGTATTTTG CAATGTAGTC TTATTATCAC CTTGAGTTGG TCCGTGTCTA GACTTTCAAC
  TGCCTGAGCT CTGTGGGAGA CTGGCATTCC AAGAACCTAG GATTAGCCCA CAGCAAGGGG
  CAATGCCTCT TTAATGACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835699	NES08682966	PERLEGEN	MM_PANEL2	f	SNP	C			C	C		A	A		C	C	C	C		C
ss45381447	mCV22939301	ABI	CRAMUS_MOUSE	f	SNP		C	A			A	A
ss148391765	ENSMUSSNP2166600	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A				A
ss320632137	CHEV_2_180178945	CHEVERUD	SCREENING_POP	f	SNP									A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27665578					SNP	C	C	A	C	C	A	A	A	A	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835699	NES08682966	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180086033 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr397580	regulatory region 397580	227 bp downstream
Rr572757	regulatory region 572757	878 bp proximal
Tssr22237	transcription start site region 22237	1963 bp downstream
Tssr22238	transcription start site region 22238	1176 bp downstream
Tssr22239	transcription start site region 22239	187 bp downstream
Tssr28110	transcription start site region 28110	406 bp upstream
Tssr28111	transcription start site region 28111	307 bp upstream