rs27665569 SNP Detail

Summary

• ID
  rs27665569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180089415 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGTATGGT GATGAGCAGA
  GAGAGATGCA GAAATATGTA CAAGCCTACA GGGGAACAGC CTGCCTATCA TTGCTCCCTA
  AGCAGGGGGT CACAGCTCAG ACCAGAGGGA AGTATGGGAA CTGGGAAAAC ATCCCACATA
  TTCCTGTCAC ATGCCACAAG CCATGTTATA ATGGGACCAT TGCAATAAAT GAAATTTCTG
  R
  GATAAAAACA GGAGGCAAAA AACGGAGAGA AATGAAAGAC ACTGGCAGAG ATAGATGAAG
  ATGCACAGAG GGGGAGGGGA GAGAGCCCCA GGGGTCAGCT GCCCGCAGCC TGGGGCTGAA
  AGGAAGCTCA GGGCCCAGCC GGCAGAGGAG TGAGACAGAT TGGGAACGGG GCTTAGAAGA
  GAGAATCTCT CTGAGGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37835690	NES08682909	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665569					SNP	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835690	NES08682909	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180089415 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr572757	regulatory region 572757	1767 bp distal
Rr572758	regulatory region 572758	1281 bp proximal