rs27665568 SNP Detail

Summary

• ID
  rs27665568
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180089567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACAAGCC ATGTTATAAT
  GGGACCATTG CAATAAATGA AATTTCTGGG ATAAAAACAG GAGGCAAAAA ACGGAGAGAA
  ATGAAAGACA CTGGCAGAGA TAGATGAAGA TGCACAGAGG GGGAGGGGAG AGAGCCCCAG
  GGGTCAGCTG CCCGCAGCCT GGGGCTGAAA GGAAGCTCAG GGCCCAGCCG GCAGAGGAGT
  R
  AGACAGATTG GGAACGGGGC TTAGAAGAGA GAATCTCTCT GAGGGGCCTA GGGTCTCCTG
  AGAATCTGAC TGGCACCCTG GAGAAGGCAC CGGAGTGTAT GTAGTGAGGT ACGTCAGTGA
  GCTAAGGCAG TGCTGTAGGG TGCAAGCTCC TGTTGGTCAC CCAAGGGTAG GTGATTACTG
  ATTAAACTCA AGGTGTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37835689	NES08682910	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665568					SNP	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835689	NES08682910	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180089567 () rs orientation: forward

Symbol	Name	Function Class
Gm75546	predicted gene, 75546	within coordinates
Rr572757	regulatory region 572757	1919 bp distal
Rr572758	regulatory region 572758	1129 bp proximal