rs27665522 SNP Detail

Summary

• ID
  rs27665522
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180700411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTTAAA TCATGTCACA
  CATCCCGCAA GCAGCAACAG GAAGAGGCTC CTTTGTGGGC ATCTGGCTGT CCCTTCCTCC
  AGGGCATGTG AATAACATGT ATCAGTTCAC ATACACCAGA CTCCACACTT CAATTTCTGG
  TAGTAAAACC ATTATTTCTG ATGCAAATTT CTCAGCTCAA ATAAATTACT GGAGCTTACC
  Y
  TCTAGGGAAT AAAACATGGG CCATCTGTGT TTCTGTGTCC TCGAGACTGC CCAAGGACTC
  TACTCATTTC TCACTTTTGT ATCTACCTAC CACTCCCGAT CCAGCCCTGC CAGATGACTC
  TTAGCAAAGA GTCATAGAGA CTGCTGATGT GTCACAGGCT CTGCCACACC TTCACCATGA
  GCACTCATAG TGTGCAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832946	NES08679308	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665522					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832946	NES08679308	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180700411 () rs orientation: forward

Symbol	Name	Function Class
Rr572913	regulatory region 572913	872 bp distal
Rr572914	regulatory region 572914	1460 bp proximal
Rr572915	regulatory region 572915	1742 bp proximal