rs27665513 SNP Detail

Summary

• ID
  rs27665513
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180701293 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGATGAA TAAACCCTTT
  CCTCCCCAAT TTGCTTCTTG GTCAGATGTT TTGTGTAGGA TAGAAACCCT AGCTAAGACA
  CTCAGGCATT CTCTGCACCC TCACAATGGT CTGTTCACAG CTGATGCTCA CAGAGACTGG
  ATCTACTATA GTTTTCTGAT GCAGGAGAAA GCACCTGCTT GGTCTAGCTA CAGTCAAAAG
  R
  CCAGCCAGCA ACCATGCCTC AGTTAGTTGT AAGGCCTTTT GTACATTTCC CACAACTTGT
  CCCCAGGTCT CTGATCCTAC ATGGCAATAG GCCCTGGGGT GATATGGATT GGAGTGGTGA
  TGAGAGGGCC TTGAGTAGAG GGAGTCAAAA CATGACCAGA GTGGCTACCT CATGGGACAG
  ATCTCCAGGC ATTCAGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832937	NES08679168	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27665513					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832937	NES08679168	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180701293 () rs orientation: forward

Symbol	Name	Function Class
Rr572913	regulatory region 572913	1754 bp distal
Rr572914	regulatory region 572914	578 bp proximal
Rr572915	regulatory region 572915	860 bp proximal