rs27660185 SNP Detail

Summary

• ID
  rs27660185
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9485742 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTGCCC TCTCTCTCCC
  TCACTCCCTG TCTCCCCTCT TGATCCTCTT TCCCCCTCCA ATCTAACAAG AACACCCGTT
  TTGCTAAAGG TGCAATGACC ACGTTCCACG TGACTCCAGC ATCCACACTG GAACTCAGAT
  CACAGATTTA ATTTCAATAG TATTCCTTAC AGTGACACCA TTCCAACAAG ATAGACAGTA
  K
  TTAAACTTTC AAAGGTTTTG GGAAATCAGC CACTGGGGCA GGATACATTA TAAAGTTAAT
  AACAAAAGGA AAAAATGTTT AGAGTTCAGT CAAATAAACA TGCCCTTGAC TTATTCTGTA
  TAAGGTTGCT CTAGCCTCAG CTGGGGCTTC ATGTGGGCAG ATTTAGTGAC TGATGATGCT
  GGTTCTTGTC CCATTGCACT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37856404	NES08654919	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27660185					SNP	G	G	G	G	G	T	G	G	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856404	NES08654919	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9485742 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588697	regulatory region 588697	1749 bp proximal