rs27660177 SNP Detail

Summary

• ID
  rs27660177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9486917 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCTAACA TTTTGTTGTT
  GTTGTTTTAA ATTCCCTTCC TTTTCTCTGG CTATGAATAC AATCCGCTCC TAGGGTACAG
  AAACCTGAGA CAATAGATGC AGACTGCTCC CCAATTCTGG AATCACATAT AAGACCAATT
  AAGGTCTTAG AAGGTTATAT TTGTCATCCT CGCTTTTAAA ACCAGGGGAC ATTTTTATAT
  Y
  ATGTGAAAAC AGGGGAGCTC TTAGACTACT GCAGGGCACA GGGTTTTGAT TAGAGAATGC
  TTTGGTAATT CTGTCCCTAT GAAGCCCATC ATTGCCTTCC TTGCAACCCC TGTGCCTCCT
  CCTCCCGTGT GGAGGCCTGC CAACCACTGG TCCTTGTTCC ATGCCGTCCA ACAACTGCAG
  TCCCTCTTCA GTCATCCCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37856396	NES08654935	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27660177					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856396	NES08654935	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9486917 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588697	regulatory region 588697	574 bp proximal