rs27660176 SNP Detail

Summary

• ID
  rs27660176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9486955 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTTTCTCT GGCTATGAAT
  ACAATCCGCT CCTAGGGTAC AGAAACCTGA GACAATAGAT GCAGACTGCT CCCCAATTCT
  GGAATCACAT ATAAGACCAA TTAAGGTCTT AGAAGGTTAT ATTTGTCATC CTCGCTTTTA
  AAACCAGGGG ACATTTTTAT ATTATGTGAA AACAGGGGAG CTCTTAGACT ACTGCAGGGC
  W
  CAGGGTTTTG ATTAGAGAAT GCTTTGGTAA TTCTGTCCCT ATGAAGCCCA TCATTGCCTT
  CCTTGCAACC CCTGTGCCTC CTCCTCCCGT GTGGAGGCCT GCCAACCACT GGTCCTTGTT
  CCATGCCGTC CAACAACTGC AGTCCCTCTT CAGTCATCCC AAGCTGGCAG GTTATAGCTA
  GGAAGAGCAA GAGCTCAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37856395	NES08654937	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27660176					SNP	A	A	A	A	A	A	A	A	A	A	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37856395	NES08654937	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9486955 () rs orientation: forward

Symbol	Name	Function Class
Asph	aspartate-beta-hydroxylase	Intron
Rr588697	regulatory region 588697	536 bp proximal