rs27658972 SNP Detail

Summary

• ID
  rs27658972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169506235 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGGCTTC CCGGTGCCTA
  TGACGTGCTC AGGAGCCAAG AAGCAAACAA GCCGCTCAGT CTAATTTATC ATCCTTCAGG
  AAAGCAGGCT GAAACTTTTT CTTCTGGCTA GACTAAATAG AGTCCAAACT TATCTTCTGT
  TTCATTTTGA AAGGGGGGAA AAAAAAGCAA GACAGACAGC AGTCCAGCAC TCTTTTAAGA
  Y
  GGGTGACATT TCACAGCGGT TTTAGTTACC TACGGCCTCT TCCACTATCC TGTTTCATAA
  ACAGAGCATC ATTGTCTGAT AGCAGGGGTG TGGTTTGGAG CAGCCTGTCC CTGCTGGACG
  TCCTGAGGCT CTTGGATGAC ATTTTCCTGC TTTGATGGAG AATGGCCTGA ACAATATTAC
  CGTGGCCCTT TTATCTGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37821304	NES08725558	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27658972					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37821304	NES08725558	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169506235 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	1295 bp downstream
Rr571229	regulatory region 571229	within coordinates
Rr571230	regulatory region 571230	1904 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	607 bp upstream