rs27658969 SNP Detail

Summary

• ID
  rs27658969
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:169507758 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGCTCCAT GGGACAATTG
  TGACATGCGT GGAGCCTCTG TGAGCTTCCT TTCATTCTTC AGGTACAACA TAAGAGAGGT
  CATGTGAGTT TATCAGCAGG CGCCATCTTG GTGTCTTTGA ATCCTAACCC CAGCTCTAGC
  GGGCTGGCCG CTTCGTGTTC AGATGAGCTG TTGAGGATAA GAGCTTTACA AACCTCAGAC
  Y
  TCGGGGGCTG GCTGGACTCC TTTCCCGCTG TGACTGATGT CTTCAGAATT CCACAGACAG
  CTCTGAATTG CATTTCTACA CTGTAGACAT AACAGGAGAC ATGCAGAAGG ACAAATGTGT
  TAGGTACGAA CGCTTCCATG AACTGCAGAG ATAGTAGAAA GTCAAAGCTA GATTCTTTCT
  CTAAGCCCTC TGGCGTGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37821301	NES08718688	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27658969					SNP	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37821301	NES08718688	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:169507758 () rs orientation: forward

Symbol	Name	Function Class
Gm34344	predicted gene, 34344	within coordinates
Rr571229	regulatory region 571229	1136 bp distal
Rr571230	regulatory region 571230	381 bp proximal
Tshz2	teashirt zinc finger family member 2	Intron
Tssr21905	transcription start site region 21905	900 bp downstream